Browse of TCMCG057C54336 protein

CDS

Accession Number	TCMCG057C54336
gbkey	CDS
Protein Id	XP_018460279.1
Location	join(21894..21917,22042..22115,22199..22338,22419..22505,22588..22675,22754..22831,23047..23124,23217..23296,23762..23840,23925..24251,24469..24528,24774..25011,25088..25136,25217..25362,25561..26901,27061..27238,27370..27484,27614..27701,27801..27879,28025..28320,28427..29504,29656..30021,30139..30697,30699..30795)
Gene	LOC108831214
GeneID	108831214
Organism	Raphanus sativus

Protein

Length	1915aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA344915
db_source	XM_018604777.1
Definition	PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACTAATGTTTTCAGAATCGGAGGTCTACATAACGTTTCTTGGTTTCAGTTTCTTCCAAGTGAAGCTGAGCTGAGTCCTGCCTCTGATACAAGTTCAAGAGCTGAGCAGAATGATGTTGCAACGTATCTTGTGCTTTCATCTCATCTTCGTTTGCAGAAGGAAGGCTTTCTTACCACATGGACCAATTCTTTTGTTGGACCTTGGGATCCTTCTCAAGGCTTATACAACCCTGATGAAAAGATCAAGCTTTGGCTTTTTCTTCCTGGCCGTCATTCTTCAATCACTGATAAAGCTAAGGCTGCTGTCTCAAAACTTAGAGTTGTTGCTTCTGGAATCTGGGTAGCACCTGGGGACTCGGAAGAGATATCAGTTGCCTTTTCACAGTCTTTACGTAATTGCATTGCAAGAGCATTAACTGGACTTTCCTACATGAGATTTGGAGATGTTTTTTCAAAATTCGTCCCTCAGAGTGAAGAATATTTGAGGAGGGGACAGCCTACTGTTGAATTCATCTTTGCTGCTACCGAAGAGGCAGTTTTTGTCCATGTCATTGTGTCTGCCAAGAATGTCCGGACACTTTCAAGTGACGATGCTGAAAGACTGTTAAGGAGTTCCTTGAAAAACTCCAGTTATAGGCTTCCCGTGATTGTTTCTCCTCATGGTATGCGGGGCAGCCTCACTGGATTCTGTCCCAGTGACCTTGTCAAGCAAGTCTACTTCAGTTCTGGAAACATGGGGACTTCGAGTGGATATATTGGTCTCCCTTCTCATGTTGGTCGTGGGTCCCATCTAATAAATGACAATCATTGTTACGTGGAAGTTACACTTGGTAGCTGCCAAAGTAGAAATGACAACACAAGTCAAACTAATTCGACCTTTGCGGTAAACTTGCCCCATAATCAGCGTCCTGAACCATCAGTTGGGAGTAGAGATCACCGGAAAGGACAACCAGATATCTTATCGGTGCGTGAAAAAAAGTTCATGTATCCAGCTGAGGCAGTGCTTGTGCCAGTCTTACAGTCGGCATTTGCTAAATTTTCTTTGAAAAGATTTTGGCTTCAAAACTGGATAGGACCATCACTGGCAGGCTCATCGTTATTTATGCACTGGGGTGGTGATTTTGACTTCCTTGGATCGTCTGGAAATAAGAGTGATGGGTTTTATGAAAAAAATGGTGGTTATAGTAGCAGCGGCAGTAGCCGTAATAGTAGCATTAGTTCAACAAGTAGTGCTTCTAGCGGGAGTGATTGGAGAATGACTTCAAGAACTGGTGACCTTGATGCTGATGCAGATTCTTTGACGTGTAGGCAGTCTGGTCTAACTTGCAATGATGATCGGCCAAAATCGGGTTCCAAGCGGTCGCGAGCAGGGAGGGCAGAGTCTTTCGGTCAAGTAGGCATTGCAGATGATCAAATTGGCTGGGATTGGGATGACGATGGTGATGATGATGATAGAGGAGTTGGTATGGATATCAAGGCACTTCTTTCAGAGTTTGGAGACTTTGGTGACTTCTTTGAGAATGATGCGTTGCCTTTTGGGGAGCCACCGGGCACAGCAGAGTCACATACGCTAATGATTCCTCCAGATTCTGCTGAAGTAGGTTCTAGTCCAGTGGATATGATGGATGTATCAGACCAGATTATTTTTCCCGATGGCTTTTCCTCTTTTGAGAGCTTTAATCCTGCTCCCCCTATCATAGATGAGTGCCTTATCAAAAGTCAAGAAGTCATCAACAACAGTGTCACTTCAGATCATTTAAATCAAATGTCAAGCTCTTCTACTGGTGAGTTTGATCATTTGATAAAAGCAGAAGCTATGATGACCTTTGCTCCTGAGTATGGAGCTGTTGAAGTACCTGTGAGCGAGATTTCGTCTTTCAAAAGCCCATATCTCCCCAAATCTCATATAGTGGAGAGTTCAAATTCAAGAACGAGTAACTATGTTTATGGGCCCACACCACCGGCCACCGATTGTGATGGAGCAGCCGACAAGAATTTACTTGGATCAAAAGCGTGCATTGGTAACAATGATGGCAGAACTTTGTTTCAGTCGAGAGACTATTACACTCAAGTGGAGGGCAGAAAGGACCAATATAACATGCTACCTACTGTAATTAGCGACAACAGTAGTACAAAGGAGGGTGTTTCTCAGTTAAAATATTCAAACTACAGTGCTGTTAAGACCGTACAAGGGAAAAAGTCTGACGGTATATCTGCTGTTGTTAGTACTTTATTATCTTCAAAGACCTTGTTGGCAACAGACGTGGGAAGCTTTATGTTCCAAGCTTTCATGTCTAGGATGCGGCACATAATCATTTCTTCGAAGCACAGTTCACCAGTTAGTCTGACAAGGCTTAGTGGAAACTTATTTCTCAACCAGCTGTCAAATGACCCCAGTAGCCTAACAGACAACATATCTGCAAGGAATGAGATATATAAGAAAGAAATACCAACTAGAATAGCTGGAGATTTCGACGGAGGAATGTTAGATAGCCGCATGAGTGCACCAGTTGGCGTGTGGCGGACTGTTTCAGTCCCAAAAACAGCAAAACCTGCTAGCTCGCCAAATATTGAAGCAGGCTCATCCTTGCCCCATAGTTCATTTAGCGAAGACAGCTTGCTTTCTTACGGCCAAAGGCAGCCATTGCAAGAACTCCAAGATGGAATACCGCTACTTGTACAGCAAGCTACTTCTTTTGTTGATTTAGCGCTGGATTCAGATTGTGGAGATGGTCCTTATGGCTGGCTTGCGCTGGAAGAGTTATGGAGACGGGAACTTTCGTGTGGGCCCTCTGCTGGCCATGCGGGTTGTGGGGGAACTTTGGCTTCCTGTCATTCTCTGGATATTGCTGGTGTCAAGCTAGTTGACCCACTCTCTGCTGAGGTTTTTCCTTCGTCTGTCATTACTCTATTGCAATCTGACATCAAAACAGCTCTGAAATCTGCATTTGGTCAGTCAGATGGGCCATTATCTGTGACAGATTGGTGCAAGGGTCGAAATCAATCAATGGATGGGGGATCTATGTCCGAGGGATCTACTGCTGAGTCATCCCTGCGTGAAGTGATGTCAATAGATGGTGGGAAGGGAGAGGAGACTACTCAGAGCCAAGATATATACAGTTCAGAATTACTCCGACCGACACTTTTTGTTCTTCCATCACCTTCTATACTTGTCGGGTACCAAGATGACTGGCTTAAGATATCAACTAACGCCTTGCAACATTGGGAAAAGGCCCCTTTCGAGCCATATGCTTTGCCCAAAAATATGAACTATACTGTTGTATGCCCGGATATAGATCCTTTAACTAGTGCTGCTGCTGATTTCTTCCAACAACTTGGAACTGTTTACGAGACCTGCAGACTGGGAACCCATTTGCCACATATCCTGGGAAATCAAATGGAAACTGACGCTGGAAAGCTATCCTCATCTGGATTTGTTCTGCTTGATTGCCCTCAATCCATGAAGATTGAAAGCAATAACACATCGCTTCTGGGATCTCTCAGCGATTATTTTCTGTCTTTGTCGAATGGGTGGAATGTGACTAGCTATCTAAAGTCTTTATCAAAAGCGCTGAAAGGTCTAAAGCTTGAGTCTTGCCTTTACACAAACCAGAAAGAAGGATCAGCTAGTCCTTGCATTGTAGTGTACATAGTGTGTCCATTTCCCGATCCTTCGTCAGTTTTAAGGACGATCGTCCAATCGTCAATTGCACTTGGATCAGGAATACAGCCAGATAAAGACAGGAGATCGTTACTTAACAATCAGGTTGCAAGGGCGTTTGGTAGTTCTGCTGCTGTAGACGAAGCATCAATATCTCATATTCCAGTGCTTTCGGGGTTTAGTGTCCCTAAACTAGTTCTACAGGTGGTGTCGGTTGATTCTATTTTCCGGATAACAAGTCCGAGCTCTGAGCTTGTCATTCTCAAGGATACTGCCTTTTCTGTATACAATAAGGCTCGTAAAATTTCACGAGGAATGGCTAATGATGCAATTCAATCGTCCTCTTTATCAAGCAGATCCTCTTCAGCCTTGACACCATTGAGCTCTATTTCAGGAATCTGGAAAGACTGTGTTAGTTCTCGAATGACAAGTTCTACACATCCAAGAGATGGTGAAAGGGATAGTAGCATGAGAACGAGTTGGGATAGCTGGCAAATGAGAAGACCTGGTGGATTAAGCTGCGACCCAAACAGAAATGAAGATTTTTACCTTAATGATGAAAGTTTCTATTTATTTGAACCGCTTTTCATTCTTTCCGAGCCTGGTTCAGTGGAGCGTGGAGTTTCACCTACTTTTGGCGGCCTAGGTTCGGAGTCTTCAAAGCCAATACCTGAGGATGGTGGCAGAGGTTCTGGACTTGGCGTCAATGCAATGGAGGGTATAACATCAGCAGGATCAAGCTCCCAGGGGGATGCATCCCAGGTTGAAGGAAAGACTATTCCAAGTTTACATTGCTGCTACGGTTGGACAGATGATTGGCGATGGCTTGTAAGCATCTGGACAGATGCCAGGGGTGAATTGCTTGACACACATATATTTCCCTTTGGTGGAATTAGCAGTAGACAGGATACGAAAGGGCTGCAGTGTCTTTTTGTTCAAGTTCTGCAGCAGGGATGTCAAATACTACAGGCATGTTCCTCCCCTGACAATGGATCTTCGAAACCCAGAGATTTTGTCATTACACGTATTGGCAATTTCTTTGAGCTTGAATACCTAGAGTGGCAAAGGGCTATATACTCAGTTGGAGGTCCTGACATTAAAAAGTGGCCTATTCAACTTCGTCGTTCTGCACCTTCTGGCATAGCCACCAATAGCAGCGTATCTTCCTTGCAACCGCAGGATATGAGTTTGATTCAAGAGAGAGCCTCGTCAAGTAGCACACTCTACAGCTCTCACTCAAAATCATCCACCTTTGTGAAAGGCAGTATGGGGCAATCTGCTGGAAGAAAGCAGATAGTGGGTGGACAAACCATTTCTGGTACTCCAAGGGGTTTGTTTCAGTGGGTTCACAGCATCAGTTTTACTTCTATTTCACTTGATCAATCTCTGCATCTTGTTCTCCCCGCTGATGTGGTATCTCCTGGAGGTACTGGTATGAGTTCATCAAATTACATTGAAGGTTTCACTCCTGTCAAATCTCTTGGGTCAACGGCCTTCTCTTACATGATGATACCATCACCCAACATGCGGTTTCTTCACCCAAGTCCTCTTCAGCTTCCCACATGTTTAACTGCCGAATCACCTCCGCTTGCTCACCTTCTTCACAGCAAGGGCTGTGCAATCCCCTTGTCTACCGGGTTTGTTGTTTCAAAAGCTGTGCCTTCCATGAGAAAAGACTCGAGAATAAATATGAAAGAAGAATGGCCATCAGTTCTCTCTGTAAGCCTCATTGATTACTATGGTGGTTATGACAGCGCTCATGACAAAATTCTTCAAGGAATCATGAAGCAAGGTGGAGGGACCCAAGAAACTAGAGATTTTGAGGTGGAAAGCCATCTTATCCTTGAGTCTGTTGCGGCAGAACTCCACGCTCTATCGTGGATGACTGTAAGTCCAGCATATTTGAATAGGCGGACGGCATTGCCTTTTCACTGTGATATGGTTCTCAGACTGAGACGTCTGCTTCATTTTGCGGATAAAGACTCCAGACTACCAGATAAACCAGGAGTTTTTGAAACAGTGCAGAAGAATACAGATGAGACCAACCTTTCCGTGAACTGCATCCTGACCTTCACTTAG

Protein:   MWTNVFRIGGLHNVSWFQFLPSEAELSPASDTSSRAEQNDVATYLVLSSHLRLQKEGFLTTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSITDKAKAAVSKLRVVASGIWVAPGDSEEISVAFSQSLRNCIARALTGLSYMRFGDVFSKFVPQSEEYLRRGQPTVEFIFAATEEAVFVHVIVSAKNVRTLSSDDAERLLRSSLKNSSYRLPVIVSPHGMRGSLTGFCPSDLVKQVYFSSGNMGTSSGYIGLPSHVGRGSHLINDNHCYVEVTLGSCQSRNDNTSQTNSTFAVNLPHNQRPEPSVGSRDHRKGQPDILSVREKKFMYPAEAVLVPVLQSAFAKFSLKRFWLQNWIGPSLAGSSLFMHWGGDFDFLGSSGNKSDGFYEKNGGYSSSGSSRNSSISSTSSASSGSDWRMTSRTGDLDADADSLTCRQSGLTCNDDRPKSGSKRSRAGRAESFGQVGIADDQIGWDWDDDGDDDDRGVGMDIKALLSEFGDFGDFFENDALPFGEPPGTAESHTLMIPPDSAEVGSSPVDMMDVSDQIIFPDGFSSFESFNPAPPIIDECLIKSQEVINNSVTSDHLNQMSSSSTGEFDHLIKAEAMMTFAPEYGAVEVPVSEISSFKSPYLPKSHIVESSNSRTSNYVYGPTPPATDCDGAADKNLLGSKACIGNNDGRTLFQSRDYYTQVEGRKDQYNMLPTVISDNSSTKEGVSQLKYSNYSAVKTVQGKKSDGISAVVSTLLSSKTLLATDVGSFMFQAFMSRMRHIIISSKHSSPVSLTRLSGNLFLNQLSNDPSSLTDNISARNEIYKKEIPTRIAGDFDGGMLDSRMSAPVGVWRTVSVPKTAKPASSPNIEAGSSLPHSSFSEDSLLSYGQRQPLQELQDGIPLLVQQATSFVDLALDSDCGDGPYGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTALKSAFGQSDGPLSVTDWCKGRNQSMDGGSMSEGSTAESSLREVMSIDGGKGEETTQSQDIYSSELLRPTLFVLPSPSILVGYQDDWLKISTNALQHWEKAPFEPYALPKNMNYTVVCPDIDPLTSAAADFFQQLGTVYETCRLGTHLPHILGNQMETDAGKLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVTSYLKSLSKALKGLKLESCLYTNQKEGSASPCIVVYIVCPFPDPSSVLRTIVQSSIALGSGIQPDKDRRSLLNNQVARAFGSSAAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSSELVILKDTAFSVYNKARKISRGMANDAIQSSSLSSRSSSALTPLSSISGIWKDCVSSRMTSSTHPRDGERDSSMRTSWDSWQMRRPGGLSCDPNRNEDFYLNDESFYLFEPLFILSEPGSVERGVSPTFGGLGSESSKPIPEDGGRGSGLGVNAMEGITSAGSSSQGDASQVEGKTIPSLHCCYGWTDDWRWLVSIWTDARGELLDTHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDNGSSKPRDFVITRIGNFFELEYLEWQRAIYSVGGPDIKKWPIQLRRSAPSGIATNSSVSSLQPQDMSLIQERASSSSTLYSSHSKSSTFVKGSMGQSAGRKQIVGGQTISGTPRGLFQWVHSISFTSISLDQSLHLVLPADVVSPGGTGMSSSNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPSMRKDSRINMKEEWPSVLSVSLIDYYGGYDSAHDKILQGIMKQGGGTQETRDFEVESHLILESVAAELHALSWMTVSPAYLNRRTALPFHCDMVLRLRRLLHFADKEXSRLPDKPGVFETVQKNTDETNLSVNCILTFT